Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_16410Fe3+ ABC transporter periplasmic protein. (343 aa)    
Predicted Functional Partners:
GWL_16420
Fe3+ ABC transporter permease.
 
 
 0.999
GWL_16430
ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.997
GWL_27040
Fe3+ ABC transporter permease.
 
 
 0.955
GWL_38960
Fe3+ ABC transporter permease.
 
 
 0.945
GWL_27050
Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.914
GWL_13320
Fe3+ ABC transporter periplasmic protein.
  
  
 0.902
GWL_38940
Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.900
GWL_38970
Fe3+ ABC transporter periplasmic protein.
     
 0.878
phnX
Phosphonoacetaldehyde phosphonohydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
 
   
 0.740
GWL_16400
Secreted glycine/D-amino acid oxidase.
 
     0.685
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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