Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_16440Hypothetical protein. (162 aa)    
Predicted Functional Partners:
GWL_24400
Outer membrane hemin/siderophore receptor protein.
  
 0.816
GWL_09820
TonB-dependent siderophore receptor protein.
  
 
 0.769
GWL_18430
Hypothetical protein.
  
 
 0.769
GWL_26180
TonB-dependent receptor protein.
  
 
 0.769
GWL_38510
TonB-dependent siderophore receptor protein.
  
 
 0.769
GWL_42850
TonB-dependent hemoglobin/transferrin/lactoferrin receptor protein.
  
 0.763
GWL_02230
TonB-dependent copper receptor protein.
  
 0.758
GWL_01100
Biopolymer transport ExbD/TolR protein.
  
 
 0.750
GWL_01980
Biopolymer transport ExbD/TolR protein.
  
 
 0.750
GWL_05650
Biopolymer transport ExbD-related transmembrane protein.
  
 
 0.750
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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