Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_18420L-lysine 6-monooxygenase (NADPH). (439 aa)    
Predicted Functional Partners:
GWL_18410
Hypothetical protein.
 
 0.992
GWL_18520
MbtH-like protein.
 
  
 0.972
GWL_18480
Hypothetical protein.
 
 
 0.951
GWL_18400
Pyoverdine synthetase E, pdvE.
 
  
 0.913
GWL_18450
Hypothetical protein.
 
 
 0.855
GWL_18510
Hypothetical protein.
 
  
 0.734
GWL_18460
Hypothetical protein.
 
 
 0.728
GWL_18430
Hypothetical protein.
     
 0.611
GWL_18470
Hypothetical protein.
 
     0.593
GWL_18490
Taurine catabolism dioxygenase TauD, TfdA family protein 2.
 
     0.562
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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