Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_18480Hypothetical protein. (3049 aa)    
Predicted Functional Partners:
GWL_18520
MbtH-like protein.
 
 0.999
GWL_18510
Hypothetical protein.
 
 
 0.997
GWL_18490
Taurine catabolism dioxygenase TauD, TfdA family protein 2.
 
 0.995
GWL_18500
Hypothetical protein; Belongs to the P-Pant transferase superfamily.
 
 0.993
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.977
GWL_30680
Acyl carrier protein.
  
 0.977
GWL_30690
Acyl carrier protein.
  
 0.977
GWL_30840
Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
 
 0.973
GWL_18450
Hypothetical protein.
 
 
0.972
GWL_18790
Cytochrome P450 monooxygenase.
 
 0.966
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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