Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_18490Taurine catabolism dioxygenase TauD, TfdA family protein 2. (338 aa)    
Predicted Functional Partners:
GWL_18480
Hypothetical protein.
 
 0.995
GWL_18510
Hypothetical protein.
 
 
 0.958
GWL_18450
Hypothetical protein.
 
 0.943
GWL_18520
MbtH-like protein.
 
   
 0.939
GWL_18460
Hypothetical protein.
 
 0.921
GWL_18500
Hypothetical protein; Belongs to the P-Pant transferase superfamily.
 
     0.814
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
 
 0.777
GWL_18400
Pyoverdine synthetase E, pdvE.
 
   
 0.744
GWL_31580
Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.
  
 
 0.742
GWL_10370
Hypothetical protein.
 
 
 0.727
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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