Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_18520MbtH-like protein. (71 aa)    
Predicted Functional Partners:
GWL_18480
Hypothetical protein.
 
 0.999
GWL_18450
Hypothetical protein.
 
 0.987
GWL_18460
Hypothetical protein.
 
 0.985
GWL_18510
Hypothetical protein.
 
  
 0.976
GWL_18420
L-lysine 6-monooxygenase (NADPH).
 
  
 0.972
GWL_18490
Taurine catabolism dioxygenase TauD, TfdA family protein 2.
 
   
 0.939
GWL_18400
Pyoverdine synthetase E, pdvE.
 
  
 0.910
GWL_15750
Major facilitator superfamily permease.
  
 
 0.884
GWL_18500
Hypothetical protein; Belongs to the P-Pant transferase superfamily.
 
  
 0.874
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.865
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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