Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_18770GntR family transcription regulator protein. (212 aa)    
Predicted Functional Partners:
GWL_27260
Hypothetical protein.
  
     0.762
GWL_12830
Transcriptional regulator, GntR family.
  
     0.761
GWL_36320
GntR family transcription regulator protein.
  
     0.758
GWL_31570
GntR family transcriptional regulator.
  
     0.747
GWL_05420
GntR family transcription regulator protein.
  
     0.745
GWL_31380
GntR family transcriptional regulator.
  
     0.744
GWL_08140
Transcription regulator protein.
  
     0.742
GWL_39050
GntR family transcription regulator protein.
  
     0.733
GWL_27150
Transcription regulator protein.
  
  
 0.712
GWL_36390
Transcription regulator protein.
  
     0.700
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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