Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_18910Surfeit 1 protein. (283 aa)    
Predicted Functional Partners:
GWL_18940
Cytochrome o ubiquinol oxidase subunit I protein; Belongs to the heme-copper respiratory oxidase family.
 
 0.975
GWL_18950
Cytochrome o ubiquinol oxidase subunit II protein.
 
 0.975
GWL_18920
Ubiquinol oxidase subunit IV protein.
 
     0.960
GWL_18930
Cytochrome o ubiquinol oxidase subunit III protein.
 
 
 0.960
GWL_18900
Two component sensor histidine kinase.
 
     0.948
GWL_35710
Heme O oxygenase (cytochrome aa3-controlling) transmembrane protein.
  
 0.944
GWL_35790
Cytochrome c oxidase polypeptide II precursor transmembrane protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 0.874
GWL_35770
Cytochrome C oxidase assembly transmembrane protein.
 
 0.855
GWL_18890
Two component response regulator protein.
 
     0.839
GWL_35780
Cytochrome c oxidase polypeptide I transmembrane protein; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
 0.804
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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