Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_19300Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (404 aa)    
Predicted Functional Partners:
GWL_19310
Cation/multidrug efflux pump protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.989
macB
Antimicrobial peptide ABC transporter ATPase; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 0.981
GWL_19280
Outer membrane channel lipoprotein.
 
 0.958
GWL_09730
Cation/multidrug efflux pump transmembrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.956
GWL_09740
Cation/multidrug efflux pump protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.956
GWL_44600
Cation/multidrug efflux pump protein.
 
 0.951
GWL_00020
Acriflavin resistance transmembrane protein.
 
 0.943
GWL_33350
Multidrug efflux system transmembrane protein.
 
 0.942
GWL_39730
Cation/multidrug efflux pump protein.
 
 0.941
GWL_07480
Cation/multidrug efflux pump protein.
 
 0.939
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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