Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_20010Major facilitator superfamily permease. (412 aa)    
Predicted Functional Partners:
GWL_20000
AraC family transcription regulator protein.
       0.624
GWL_20020
Nicotinamidase.
       0.547
GWL_37360
Methionine synthase I, cobalamin-binding domain-containing protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
  0.523
GWL_15190
Homoserine dehydrogenase.
  
 
  0.489
GWL_12390
Type I antifreeze protein:HlyD family secretion protein.
   
  0.416
GWL_12580
Type I antifreeze protein:HlyD family secretion protein.
   
  0.416
GWL_15310
Multidrug resistance efflux pump protein.
   
  0.416
GWL_21660
Multidrug resistance A (translocase) transmembrane secretion protein.
   
  0.416
GWL_22320
Hemolysin secretion-related transmembrane protein.
   
  0.416
GWL_25350
Multidrug resistance transport transmembrane protein.
   
  0.416
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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