Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_20570Hypothetical protein. (94 aa)    
Predicted Functional Partners:
GWL_20580
Phytoene synthase.
       0.754
GWL_01470
Poly-beta-hydroxyalkanoate depolymerase.
     
  0.694
GWL_10630
poly[D(-)-3-hydroxyalkanoate] depolymerase.
     
  0.694
GWL_23410
acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
  0.694
GWL_23420
Poly(3-hydroxyalkanoate) synthetase.
     
  0.694
GWL_20560
Hypothetical protein.
       0.584
GWL_30810
3-oxoacyl-(acyl-carrier-protein) reductase.
     
  0.550
GWL_20550
Hemolysin-type calcium binding protein.
       0.442
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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