Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_21390Hypothetical protein. (82 aa)    
Predicted Functional Partners:
GWL_21380
Hypothetical protein.
       0.682
GWL_21400
Malonyl CoA-[acyl-carrier-protein] transacylase.
       0.436
mdcB
triphosphoribosyl-dephospho-CoA synthetase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
       0.436
GWL_21420
phosphoribosyl-dephospho-CoA transferase.
       0.436
GWL_21430
Malonate decarboxylase gamma-subunit.
       0.436
GWL_21440
acetyl-CoA carboxylase beta subunit.
       0.436
GWL_21450
Malonate decarboxylase delta subunit.
       0.436
GWL_21460
Malonate decarboxylase alpha subunit.
       0.402
GWL_21470
TRAP-type C4-dicarboxylate transport system large permease.
       0.402
GWL_21480
TRAP-type C4-dicarboxylate transport system small permease.
       0.402
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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