Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_21500GntR family transcription regulator protein. (222 aa)    
Predicted Functional Partners:
GWL_21480
TRAP-type C4-dicarboxylate transport system small permease.
 
     0.754
GWL_16690
GntR family transcription regulator protein.
  
  
 0.729
GWL_21490
TRAP-type C4-dicarboxylate transport system periplasmic protein.
 
     0.719
GWL_06140
GntR domain-containing protein.
  
  
 0.676
GWL_36390
Transcription regulator protein.
  
     0.660
GWL_39660
GntR family transcription regulator protein.
  
  
 0.652
GWL_21470
TRAP-type C4-dicarboxylate transport system large permease.
 
     0.645
GWL_27390
GntR family transcription regulator protein.
  
  
 0.622
GWL_21460
Malonate decarboxylase alpha subunit.
       0.561
prmB
Adenine-specific methylase/methyltransferase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
    
   0.520
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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