Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_21580Hypothetical protein. (123 aa)    
Predicted Functional Partners:
GWL_21560
Transmembrane transcription regulator.
 
     0.942
GWL_21570
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.802
GWL_21590
Protozoan/cyanobacterial globin family protein.
       0.545
GWL_21600
Hypothetical protein.
       0.526
GWL_21610
Phosphodiesterase transmembrane protein.
       0.425
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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