Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_21700D-galactose-1-dehydrogenase. (307 aa)    
Predicted Functional Partners:
GWL_38540
Galactose-1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.900
GWL_03920
Galactose-1-epimerase.
  
 
 0.897
GWL_44200
Beta-galactosidase.
  
 
  0.885
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.854
GWL_04050
Gluconolactonase.
 
 
 0.833
GWL_37570
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.832
GWL_30500
UDP-glucose 6-dehydrogenase.
    
 0.828
GWL_32620
Gluconolactonase.
 
 
 0.798
GWL_21690
Aryl-alcohol dehydrogenase.
  
 
 0.779
GWL_14980
TPR repeat containing protein.
  
 0.751
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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