Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_22270Transmembrane permease. (254 aa)    
Predicted Functional Partners:
GWL_05470
Serine proteinase.
    
 
 0.504
GWL_13750
Periplasmic trypsin-like serine protease; Belongs to the peptidase S1C family.
    
 
 0.504
GWL_34970
Periplasmic trypsin-like serine protease; Belongs to the peptidase S1C family.
    
 
 0.504
GWL_37690
Periplasmic trypsin-like serine endoprotease; Belongs to the peptidase S1C family.
    
 
 0.504
GWL_22280
3-oxoacyl-[acyl-carrier-protein] reductase.
       0.450
GWL_24500
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.405
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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