Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_22980FtsH interacting integral membrane protein; Belongs to the BI1 family. (229 aa)    
Predicted Functional Partners:
GWL_39480
Superfamily II helicase.
    
 0.637
GWL_27030
Glutathione reductase.
  
   0.614
msrB
Peptide methionine sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
 
   0.585
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
  
 0.574
GWL_22870
Transmembrane protease; HflC and HflK could encode or regulate a protease.
 
   
 0.511
miaB
tRNA modifying 2-methylthioadenine synthetase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
   
   0.495
rimO
2-methylthioadenine synthetase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
   
   0.495
smc
Chromosome segregation SMC ATPase; Required for chromosome condensation and partitioning. Belongs to the SMC family.
     
  0.492
GWL_17390
Integrase-like protein.
     
  0.492
GWL_17670
Integrase-like protein.
     
  0.492
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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