Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_25140Hypothetical protein. (182 aa)    
Predicted Functional Partners:
GWL_25150
Antimicrobial peptide ABC transporter ATPase.
 
 
 0.953
GWL_25170
Hypothetical protein.
 
  
 0.950
GWL_25120
Mn2+/Zn2+ ABC transporter ATPase.
  
 
 0.943
GWL_25160
Antimicrobial peptide ABC transporter permease.
 
  
  0.935
GWL_25110
Mn2+/Zn2+ ABC transporters permease.
  
 
 0.842
macB
Antimicrobial peptide ABC transporter ATPase; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.737
GWL_31510
Inner-membrane translocator ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
     
  0.638
GWL_25100
Mn2+/Zn2+ ABC transporter periplasmic protein; Belongs to the bacterial solute-binding protein 9 family.
    
 0.612
GWL_12590
Multidrug ABC transporter ATPase.
     
  0.541
lolD
Lipoprotein release ABC transporter ATPase; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
  
 
 0.534
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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