Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_25170Hypothetical protein. (256 aa)    
Predicted Functional Partners:
GWL_25150
Antimicrobial peptide ABC transporter ATPase.
 
  
 0.962
GWL_25160
Antimicrobial peptide ABC transporter permease.
 
     0.954
GWL_25140
Hypothetical protein.
 
  
 0.950
macB
Antimicrobial peptide ABC transporter ATPase; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.740
GWL_14410
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
   
    0.614
GWL_12550
Molecular chaperone (16 kDa) heat shock protein A; Belongs to the small heat shock protein (HSP20) family.
  
     0.487
GWL_25180
Hypothetical protein.
       0.413
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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