Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_25210Metal-dependent amidase/aminoacylase/carboxypeptidase. (399 aa)    
Predicted Functional Partners:
GWL_25220
Peptidase, M20/M25/M40 family.
    
 0.851
GWL_33030
Glutamate synthase large subunit oxidoreductase.
    
  0.816
GWL_25230
Oligopeptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
       0.660
GWL_25240
Dipeptide/oligopeptide/nickel ABC transporter ATPase; Belongs to the ABC transporter superfamily.
       0.660
GWL_25250
Dipeptide/oligopeptide/nickel ABC transporter permease.
       0.610
GWL_25260
Dipeptide/oligopeptide/nickel ABC transporter permease.
       0.581
dapD
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
 
  
 0.553
GWL_25270
Dipeptide ABC transporter periplasmic protein.
   
   0.513
GWL_23530
Pyridoxal phosphate dependent aspartate/tyrosine/aromatic aminotransferase.
 
  
 0.455
GWL_18140
Putative cystathionine beta-lyase.
 
 
  0.445
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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