Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_25570Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (483 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.978
hemF
Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
  
 0.938
GWL_25520
Cbb3-type cytochrome c oxidase subunit I transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.934
GWL_25550
Hypothetical protein.
 
   
 0.924
GWL_00960
Inner membrane protein.
 
  
 0.914
GWL_25510
Cbb3-type cytochrome c oxidase subunit II transmembrane protein.
 
  
 0.909
GWL_25540
Cation transport P-type ATPase.
 
   
 0.889
GWL_25470
Iron-sulfur 4Fe-4S ferredoxin transmembrane protein.
 
  
 0.888
GWL_25530
Nitrogen fixation protein.
 
  
 0.878
GWL_25410
Outer membrane W protein.
 
  
 0.846
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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