Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_26050Hypothetical protein. (213 aa)    
Predicted Functional Partners:
GWL_26060
RNA polymerase sigma-E factor protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.951
GWL_26120
Hypothetical protein.
 
   
 0.762
GWL_26080
Integral membrane protein.
 
   
 0.751
GWL_26040
Metal dependent phosphohydrolase.
       0.727
GWL_26110
Hypothetical protein.
 
   
 0.703
GWL_26070
Hypothetical protein.
 
    
0.682
GWL_26100
Hypothetical protein; Belongs to the UPF0276 family.
 
   
 0.640
GWL_15330
Fusaric acid resistance membrane protein.
  
     0.531
GWL_10370
Hypothetical protein.
  
     0.477
GWL_26090
Hypothetical protein.
       0.468
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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