Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_26100Hypothetical protein; Belongs to the UPF0276 family. (285 aa)    
Predicted Functional Partners:
GWL_26080
Integral membrane protein.
 
  
 0.996
GWL_26110
Hypothetical protein.
 
  
 0.996
GWL_26120
Hypothetical protein.
 
  
 0.978
GWL_25310
Serine endopeptidase.
   
    0.813
GWL_08460
Outer membrane ferric siderophore receptor protein.
   
    0.792
GWL_26220
Ferrisiderophore receptor protein.
   
    0.792
GWL_26230
TonB-dependent outer membrane iron monomeric catechols receptor protein.
   
    0.792
GWL_28010
TonB-dependent siderophore receptor protein.
   
    0.792
GWL_27840
Mg(2+) transport ATPase.
   
    0.764
GWL_26130
Methyl-accepting chemotaxis protein I.
       0.672
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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