GWL_26300 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_26300

OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase. (613 aa)

Predicted Functional Partners:

GWL_36420

0.982

GWL_31330

0.877

GWL_08820

0.826

glmS

0.812

GWL_40090

0.765

GWL_40160

0.758

argA

0.742

GWL_26200

0.736

panC

0.704

panD

0.694

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_08820	GWL_26200	GWL_08820	GWL_26200	Dihydropyrimidinase.	Transthyreretyn-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	0.440
GWL_08820	GWL_26300	GWL_08820	GWL_26300	Dihydropyrimidinase.	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	0.826
GWL_08820	GWL_31330	GWL_08820	GWL_31330	Dihydropyrimidinase.	Dihydropyrimidinase.	0.694
GWL_08820	GWL_36420	GWL_08820	GWL_36420	Dihydropyrimidinase.	Xylanase/chitin deacetylase.	0.417
GWL_08820	GWL_40160	GWL_08820	GWL_40160	Dihydropyrimidinase.	Amidohydrolase.	0.927
GWL_26200	GWL_08820	GWL_26200	GWL_08820	Transthyreretyn-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	Dihydropyrimidinase.	0.440
GWL_26200	GWL_26300	GWL_26200	GWL_26300	Transthyreretyn-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	0.736
GWL_26200	GWL_31330	GWL_26200	GWL_31330	Transthyreretyn-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	Dihydropyrimidinase.	0.440
GWL_26200	GWL_36420	GWL_26200	GWL_36420	Transthyreretyn-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	Xylanase/chitin deacetylase.	0.934
GWL_26200	GWL_40160	GWL_26200	GWL_40160	Transthyreretyn-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	Amidohydrolase.	0.577
GWL_26300	GWL_08820	GWL_26300	GWL_08820	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Dihydropyrimidinase.	0.826
GWL_26300	GWL_26200	GWL_26300	GWL_26200	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Transthyreretyn-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.	0.736
GWL_26300	GWL_31330	GWL_26300	GWL_31330	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Dihydropyrimidinase.	0.877
GWL_26300	GWL_36420	GWL_26300	GWL_36420	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Xylanase/chitin deacetylase.	0.982
GWL_26300	GWL_40090	GWL_26300	GWL_40090	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Omega-amino acid/pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.765
GWL_26300	GWL_40160	GWL_26300	GWL_40160	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Amidohydrolase.	0.758
GWL_26300	argA	GWL_26300	GWL_28710	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.	0.742
GWL_26300	glmS	GWL_26300	GWL_38070	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	L-glutamine:D-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.812
GWL_26300	panC	GWL_26300	GWL_24350	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Panthothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.	0.704
GWL_26300	panD	GWL_26300	GWL_02070	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Aspartate 1-decarboxylase precursor protein; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.	0.694