Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_26460xanthine/CO dehydrogenase maturation protein. (362 aa)    
Predicted Functional Partners:
GWL_26450
Xanthine dehydrogenase subunit B.
 
  
 0.987
GWL_26440
Xanthine dehydrogenase subunit A.
 
  
 0.962
GWL_26470
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
  
 0.867
GWL_07220
MobA-related protein.
 
  
 0.804
GWL_26260
Hypothetical protein.
 
    0.770
GWL_36430
Transmembrane protein.
 
    0.764
GWL_26200
Transthyreretyn-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.758
GWL_36420
Xylanase/chitin deacetylase.
 
     0.740
mobA
Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
    
  0.609
GWL_23470
Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
     
  0.573
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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