Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_26590Hypothetical protein. (378 aa)    
Predicted Functional Partners:
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.782
GWL_26580
FKBP-type peptidyl-prolyl cis-trans isomerase.
       0.638
GWL_07170
Benzoate membrane transport protein.
  
    0.463
GWL_36690
Soluble lytic murein transglycosylase precursor transmembrane protein.
  
   
 0.460
argS
arginyl-tRNA synthetase.
   
    0.444
GWL_12950
Hypothetical protein; Belongs to the UPF0307 family.
  
     0.411
GWL_32080
Dioxygenase subunit alpha oxidoreductase.
  
     0.408
GWL_26600
Hypothetical protein.
       0.400
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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