Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_27170Hypothetical protein. (105 aa)    
Predicted Functional Partners:
GWL_25710
Hypothetical protein.
 
  
 0.834
GWL_15300
Hypothetical protein.
    
 0.790
GWL_25700
Ycfa family protein.
  
 
 0.789
GWL_41970
Hypothetical protein.
  
  
 0.752
GWL_03050
Hypothetical protein.
  
  
 0.751
GWL_21520
HipA-like protein.
  
  
 0.707
GWL_04400
HipA protein.
  
  
 0.699
GWL_15290
Capsule biosynthesis protein.
     
 0.667
GWL_19700
GCN5-like N-acetyltransferase.
 
     0.503
vapC
Plasmid stabilization protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.500
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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