Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_28160Sugar ABC transporter ATPase; Belongs to the ABC transporter superfamily. (406 aa)    
Predicted Functional Partners:
GWL_28130
Sugar ABC transporter permease.
 
 0.993
GWL_28140
Sugar ABC transporter permease.
 
 0.991
GWL_46020
Sugar ABC transporter permease.
 
 0.985
GWL_46030
Sugar ABC transporter permease.
 
 0.984
GWL_27490
Sugar ABC transporter permease.
 
 0.971
GWL_44180
Sugar ABC transporter permease.
 
 0.971
GWL_24300
Sugar ABC transporter permease.
 
 0.969
GWL_44170
Sugar ABC transporter permease.
 
 0.966
GWL_39130
Sugar ABC transporter periplasmic protein.
  
 0.964
GWL_46010
Sugar ABC transporter periplasmic protein.
  
 0.964
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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