Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_28410Hypothetical protein. (450 aa)    
Predicted Functional Partners:
GWL_28420
Hypothetical protein.
 
 0.991
GWL_41890
Glutamine amidotransferase.
  
 
 0.973
GWL_14420
Hypothetical protein.
  
 
 0.826
GWL_30890
Hypothetical protein.
  
  
 0.761
GWL_44510
Adenylate cyclase.
    
  0.721
ribB
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
 0.715
GWL_21270
Transglycosylase-associated protein.
   
    0.561
macB
Antimicrobial peptide ABC transporter ATPase; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.521
GWL_14980
TPR repeat containing protein.
  
  
 0.520
GWL_18420
L-lysine 6-monooxygenase (NADPH).
  
  
 0.520
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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