Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
GWL_28550Arginine/lysine/ornithine decarboxylase. (750 aa)    
Predicted Functional Partners:
GWL_11480
Arginase/agmatinase/formimionoglutamate hydrolase; Belongs to the arginase family.
    
 0.912
GWL_42310
Arginase/agmatinase/formimionoglutamate hydrolase; Belongs to the arginase family.
    
 0.902
argH
Argininosuccinate lyase.
     
 0.886
GWL_12300
Spermidine synthase.
  
 
 0.804
GWL_06900
Argininosuccinate lyase.
     
 0.747
GWL_22150
GNAT family acetyltransferase.
     
 0.746
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.726
GWL_04960
Family II aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.710
GWL_40090
Omega-amino acid/pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.710
GWL_10550
ATPase.
    
 
 0.708
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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