GWL_28630 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_28630

Putative flavoprotein. (240 aa)

Predicted Functional Partners:

GWL_28620

0.808

GWL_28610

0.796

GWL_04810

0.705

ssuD

0.643

GWL_31580

0.643

GWL_10370

0.619

GWL_07130

0.604

GWL_27360

0.604

GWL_30180

0.604

GWL_04350

0.565

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_04350	GWL_04810	GWL_04350	GWL_04810	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	Sulfite reductase, flavoprotein component.	0.948
GWL_04350	GWL_07130	GWL_04350	GWL_07130	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	Electron transfer component of chlorobenzoate 1,2-dioxygenase.	0.881
GWL_04350	GWL_27360	GWL_04350	GWL_27360	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	Chaperone activity ATPase.	0.863
GWL_04350	GWL_28620	GWL_04350	GWL_28620	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	Arsenate reductase.	0.467
GWL_04350	GWL_28630	GWL_04350	GWL_28630	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	Putative flavoprotein.	0.565
GWL_04350	GWL_30180	GWL_04350	GWL_30180	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.	0.951
GWL_04350	GWL_31580	GWL_04350	GWL_31580	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.	0.406
GWL_04350	ssuD	GWL_04350	GWL_10880	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.	0.406
GWL_04810	GWL_04350	GWL_04810	GWL_04350	Sulfite reductase, flavoprotein component.	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	0.948
GWL_04810	GWL_07130	GWL_04810	GWL_07130	Sulfite reductase, flavoprotein component.	Electron transfer component of chlorobenzoate 1,2-dioxygenase.	0.960
GWL_04810	GWL_10370	GWL_04810	GWL_10370	Sulfite reductase, flavoprotein component.	Hypothetical protein.	0.650
GWL_04810	GWL_27360	GWL_04810	GWL_27360	Sulfite reductase, flavoprotein component.	Chaperone activity ATPase.	0.960
GWL_04810	GWL_28630	GWL_04810	GWL_28630	Sulfite reductase, flavoprotein component.	Putative flavoprotein.	0.705
GWL_04810	GWL_30180	GWL_04810	GWL_30180	Sulfite reductase, flavoprotein component.	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.	0.960
GWL_04810	GWL_31580	GWL_04810	GWL_31580	Sulfite reductase, flavoprotein component.	Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.	0.748
GWL_04810	ssuD	GWL_04810	GWL_10880	Sulfite reductase, flavoprotein component.	Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.	0.890
GWL_07130	GWL_04350	GWL_07130	GWL_04350	Electron transfer component of chlorobenzoate 1,2-dioxygenase.	Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.	0.881
GWL_07130	GWL_04810	GWL_07130	GWL_04810	Electron transfer component of chlorobenzoate 1,2-dioxygenase.	Sulfite reductase, flavoprotein component.	0.960
GWL_07130	GWL_10370	GWL_07130	GWL_10370	Electron transfer component of chlorobenzoate 1,2-dioxygenase.	Hypothetical protein.	0.590
GWL_07130	GWL_27360	GWL_07130	GWL_27360	Electron transfer component of chlorobenzoate 1,2-dioxygenase.	Chaperone activity ATPase.	0.778