Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_29240Hypothetical protein. (413 aa)    
Predicted Functional Partners:
GWL_14310
GDP-mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.909
GWL_14980
TPR repeat containing protein.
  
 
 0.890
GWL_14170
Glucosyltransferase involved in lipopolysaccharide synthesis protein.
  
 
 0.846
GWL_29250
Hypothetical protein.
  
 
 0.757
GWL_46560
ADP-heptose:LPS heptosyltransferase.
  
 
 0.661
GWL_46580
ADP-heptose:LPS heptosyltransferase.
  
 
 0.661
GWL_14190
Periplasmic polysaccharide export protein.
  
 
 0.598
GWL_29220
UDP-glucose:(glucosyl) LPS alpha 1,3-glucosyltransferase WaaO protein.
  
 
 0.529
GWL_03020
Putative glycocyl transferase/mannosyl transferase protein.
  
 
 0.520
GWL_06670
Glycosyltransferase.
  
 
 0.520
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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