Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_29980Transmembrane protein. (126 aa)    
Predicted Functional Partners:
GWL_29990
Hypothetical protein.
       0.789
GWL_29970
Membrane protein.
       0.679
GWL_30000
Hypothetical protein.
       0.541
GWL_30010
Hypothetical protein.
       0.512
GWL_08760
2-oxoglutarate dehydrogenase E3 component lipoamide dehydrogenase.
  
 
  0.461
GWL_17820
Dihydrolipoamide dehydrogenase.
  
 
  0.461
GWL_25960
Cation transport regulator protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
  
  
  0.432
GWL_29960
Transmembrane acyl-CoA dehydrogenase.
       0.408
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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