Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_30300Hypothetical protein. (234 aa)    
Predicted Functional Partners:
GWL_30290
Hypothetical protein.
 
 0.999
GWL_30310
Fimbrial protein.
 
 0.986
GWL_20430
P pilus assembly protein, porin PapC protein.
 
 0.971
GWL_30320
Hypothetical protein.
  
 0.830
GWL_30280
Hypothetical protein.
 
    
0.816
GWL_20410
Signal peptide protein.
   
 0.798
GWL_20440
Spore coat U domain-containing protein.
   
 0.798
GWL_20450
Signal peptide protein.
   
 0.798
GWL_20420
PilP assembly chaperone transmembrane protein.
  
  
  0.753
GWL_40550
Hemolysin activation/secretion protein.
  
  
 0.702
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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