GWL_30520 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_30520

Hypothetical protein. (108 aa)

Predicted Functional Partners:

lapB

0.893

GWL_15930

0.762

GWL_02670

0.747

GWL_16250

0.726

GWL_45560

0.712

GWL_42410

0.695

GWL_22620

0.677

GWL_30500

0.671

GWL_22630

0.644

GWL_30480

0.636

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_02670	GWL_15930	GWL_02670	GWL_15930	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	0.752
GWL_02670	GWL_16250	GWL_02670	GWL_16250	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	Transmembrane protein.	0.743
GWL_02670	GWL_22620	GWL_02670	GWL_22620	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	Porphyrin biosynthesis protein.	0.622
GWL_02670	GWL_22630	GWL_02670	GWL_22630	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	uroporphyrin-III C-methyltransferase.	0.492
GWL_02670	GWL_30520	GWL_02670	GWL_30520	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	Hypothetical protein.	0.747
GWL_02670	GWL_42410	GWL_02670	GWL_42410	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	Proline rich signal peptide protein.	0.745
GWL_02670	GWL_45560	GWL_02670	GWL_45560	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	Exoribonuclease R protein.	0.666
GWL_02670	lapB	GWL_02670	GWL_30510	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	N-acetylglucosaminyl transferase; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.	0.579
GWL_15930	GWL_02670	GWL_15930	GWL_02670	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	0.752
GWL_15930	GWL_16250	GWL_15930	GWL_16250	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	Transmembrane protein.	0.600
GWL_15930	GWL_22620	GWL_15930	GWL_22620	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	Porphyrin biosynthesis protein.	0.724
GWL_15930	GWL_22630	GWL_15930	GWL_22630	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	uroporphyrin-III C-methyltransferase.	0.733
GWL_15930	GWL_30480	GWL_15930	GWL_30480	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	DNA uptake protein.	0.497
GWL_15930	GWL_30520	GWL_15930	GWL_30520	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	Hypothetical protein.	0.762
GWL_15930	GWL_42410	GWL_15930	GWL_42410	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	Proline rich signal peptide protein.	0.667
GWL_15930	GWL_45560	GWL_15930	GWL_45560	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	Exoribonuclease R protein.	0.733
GWL_16250	GWL_02670	GWL_16250	GWL_02670	Transmembrane protein.	undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.	0.743
GWL_16250	GWL_15930	GWL_16250	GWL_15930	Transmembrane protein.	Transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.	0.600
GWL_16250	GWL_30520	GWL_16250	GWL_30520	Transmembrane protein.	Hypothetical protein.	0.726
GWL_16250	GWL_42410	GWL_16250	GWL_42410	Transmembrane protein.	Proline rich signal peptide protein.	0.482