Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_30900Sodium:galactoside symporter protein. (413 aa)    
Predicted Functional Partners:
GWL_30890
Hypothetical protein.
 
     0.940
GWL_04190
Lipoprotein.
 
 
 0.920
GWL_04170
Hypothetical protein.
 
  
 0.893
GWL_30910
Deoxyribodipyrimidine photolyase.
 
     0.829
GWL_45400
Ribonucleoside reductase large subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
  0.809
GWL_04210
Hypothetical protein.
 
     0.806
GWL_04160
Dehydrogenase.
 
   
 0.777
GWL_04200
3-oxoacyl-[acyl-carrier-protein] reductase.
 
  
 0.775
GWL_04180
Cyclopropane-fatty-acyl-phospholipid synthase.
 
    0.612
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.590
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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