Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_30910Deoxyribodipyrimidine photolyase. (524 aa)    
Predicted Functional Partners:
GWL_30900
Sodium:galactoside symporter protein.
 
     0.829
GWL_45760
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
   
 0.798
GWL_30890
Hypothetical protein.
 
     0.784
GWL_45740
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
   
 0.659
GWL_13000
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
   
 0.598
GWL_04170
Hypothetical protein.
 
   
 0.574
GWL_04190
Lipoprotein.
 
   
 0.548
GWL_45750
Hypothetical protein.
 
     0.533
GWL_04160
Dehydrogenase.
 
   
 0.503
GWL_04210
Hypothetical protein.
 
   
 0.477
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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