Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_31080Hypothetical protein. (129 aa)    
Predicted Functional Partners:
GWL_31090
Hypothetical protein.
 
   0.996
GWL_31100
Serine phosphatase, regulator of sigma subunit.
 
    0.961
GWL_31070
GGDEF domain-containing protein.
  
   0.921
GWL_44070
GGDEF domain-containing protein.
  
   0.869
GWL_13540
Hypothetical protein.
 
   0.652
GWL_21900
Hypothetical protein.
  
   0.596
GWL_22050
Hypothetical protein.
  
   0.588
GWL_00750
Hypothetical protein.
  
   0.570
GWL_07600
Hypothetical protein.
  
   0.570
GWL_21760
'signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein'.
  
   0.570
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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