Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_31270Transcription regulator protein. (270 aa)    
Predicted Functional Partners:
GWL_31260
IclR family transcription regulator protein.
 
    
0.761
GWL_33310
Transcription regulator protein.
  
     0.740
GWL_31230
4-hydroxyphenylpyruvate dioxygenase.
 
     0.581
GWL_33700
Protocatechuate 3,4-dioxygenase subunit alpha.
 
   
 0.547
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
    
 0.532
GWL_33690
Protocatechuate 3,4-dioxygenase beta chain protein.
 
   
 0.521
GWL_44100
Phosphate acetyltransferase.
    
 0.521
GWL_31250
4-hydroxyphenylpyruvate dioxygenase.
       0.515
GWL_31240
Shikimate 5-dehydrogenase.
       0.503
GWL_25020
Aromatic-amino-acid aminotransferase.
     
  0.500
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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