Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_31280Oxygen-insensitive nitroreductase. (217 aa)    
Predicted Functional Partners:
GWL_24570
NADH:flavin oxidoreductase/NADH oxidase family protein.
  
 
 0.827
GWL_22640
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
   
 
 0.743
GWL_12590
Multidrug ABC transporter ATPase.
  
  
 0.674
GWL_31300
Hypothetical protein.
       0.623
GWL_18480
Hypothetical protein.
   
 
 0.611
GWL_34470
Hypothetical protein.
  
  
 0.588
GWL_34500
Hypothetical protein.
  
  
 0.588
GWL_10410
Medium-chain-fatty-acid CoA ligase.
   
   0.583
GWL_31910
long-chain-fatty-acid-CoA ligase.
   
   0.583
GWL_32420
long-chain-fatty-acid-CoA ligase.
   
   0.583
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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