GWL_31330 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_31330

Dihydropyrimidinase. (474 aa)

Predicted Functional Partners:

pyrB

0.998

carB

0.982

GWL_40160

0.967

pyrD

0.955

GWL_39030

0.896

pyrE

0.890

GWL_26300

0.877

GWL_31340

0.876

carA

0.874

pyrF

0.840

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_26300	GWL_31330	GWL_26300	GWL_31330	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Dihydropyrimidinase.	0.877
GWL_26300	GWL_40160	GWL_26300	GWL_40160	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Amidohydrolase.	0.758
GWL_26300	carB	GWL_26300	GWL_07830	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.	0.464
GWL_26300	pyrD	GWL_26300	GWL_25940	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.531
GWL_31330	GWL_26300	GWL_31330	GWL_26300	Dihydropyrimidinase.	OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase.	0.877
GWL_31330	GWL_31340	GWL_31330	GWL_31340	Dihydropyrimidinase.	Asp/Glu racemase.	0.876
GWL_31330	GWL_39030	GWL_31330	GWL_39030	Dihydropyrimidinase.	N-carbamoyl-L-amino acid amidohydrolase.	0.896
GWL_31330	GWL_40160	GWL_31330	GWL_40160	Dihydropyrimidinase.	Amidohydrolase.	0.967
GWL_31330	carA	GWL_31330	GWL_07820	Dihydropyrimidinase.	Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.	0.874
GWL_31330	carB	GWL_31330	GWL_07830	Dihydropyrimidinase.	Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.	0.982
GWL_31330	pyrB	GWL_31330	GWL_46280	Dihydropyrimidinase.	Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.998
GWL_31330	pyrD	GWL_31330	GWL_25940	Dihydropyrimidinase.	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.955
GWL_31330	pyrE	GWL_31330	GWL_40370	Dihydropyrimidinase.	Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).	0.890
GWL_31330	pyrF	GWL_31330	GWL_27770	Dihydropyrimidinase.	Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.	0.840
GWL_31340	GWL_31330	GWL_31340	GWL_31330	Asp/Glu racemase.	Dihydropyrimidinase.	0.876
GWL_31340	pyrB	GWL_31340	GWL_46280	Asp/Glu racemase.	Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.831
GWL_39030	GWL_31330	GWL_39030	GWL_31330	N-carbamoyl-L-amino acid amidohydrolase.	Dihydropyrimidinase.	0.896
GWL_39030	GWL_40160	GWL_39030	GWL_40160	N-carbamoyl-L-amino acid amidohydrolase.	Amidohydrolase.	0.907
GWL_39030	carB	GWL_39030	GWL_07830	N-carbamoyl-L-amino acid amidohydrolase.	Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.	0.464
GWL_39030	pyrD	GWL_39030	GWL_25940	N-carbamoyl-L-amino acid amidohydrolase.	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.531