Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_32020Hypothetical protein. (447 aa)    
Predicted Functional Partners:
GWL_32040
Hypothetical protein.
 
  
 0.978
GWL_32030
Hypothetical protein.
       0.572
GWL_19200
Chemotaxis histidine kinase.
  
     0.567
GWL_34140
Hypothetical protein.
  
    0.564
GWL_34100
Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins protein.
  
     0.504
GWL_34130
Transmembrane protein.
  
    0.487
GWL_02410
N-acyl-D-glucosamine 2-epimerase.
  
     0.439
GWL_22790
Exported extracellular alpha-helical protein.
   
    0.437
GWL_40540
Hypothetical protein.
  
     0.427
GWL_23970
Cyd operon protein YbgT, putative.
  
     0.403
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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