Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_32320Glutamate/aspartate ABC transporter periplasmic protein. (299 aa)    
Predicted Functional Partners:
GWL_32290
Glutamate/aspartate ABC transporter ATPase.
 
 0.998
GWL_32310
Glutamate/aspartate ABC transporter permease.
 
  0.998
GWL_32300
Glutamate/aspartate ABC transporter permease.
 
 0.987
GWL_12590
Multidrug ABC transporter ATPase.
    
 0.769
GWL_19410
Two component hybrid sensor histidine kinase/response regulator protein.
   
 0.761
GWL_27960
Two component hybrid sensor histidine kinase/response regulator protein.
   
 0.750
GWL_31040
Two component hybrid sensor histidine kinase/response regulator protein.
   
 0.750
GWL_12560
Histidine-containing phosphotransfer (HPt) domain-containing protein.
   
 0.749
GWL_42340
Glutamine ABC transporter ATPase.
 
  0.721
GWL_17030
Glutamine ABC transporter ATPase.
 
 0.719
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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