Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_32550Amino acid ABC transporter permease. (227 aa)    
Predicted Functional Partners:
GWL_32570
Amino acid ABC transporter ATPase.
 
 0.997
GWL_32580
Amino acid transport periplasmic protein.
 
  0.994
GWL_32560
Amino acid ABC transporter permease.
 
  
 
0.993
GWL_17010
Glutamine ABC transporter periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
  0.969
GWL_42320
Glutamine ABC transporter periplasmic protein.
 
  0.966
GWL_36360
Polar amino acid ABC transporter ATPase.
 
 0.953
GWL_39680
Amino acid ABC transporter ATPase.
 
 0.953
GWL_09480
Amino acid ABC transporter ATPase.
 
 0.952
GWL_17030
Glutamine ABC transporter ATPase.
 
 0.948
GWL_42340
Glutamine ABC transporter ATPase.
 
 0.947
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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