Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lptASignal peptide protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. (202 aa)    
Predicted Functional Partners:
GWL_33510
Transmembrane protein.
 
 
 0.994
GWL_33530
ABC transporter ATPase.
  
  
 0.987
lptD
Organic solvent tolerance transmembrane protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.888
GWL_33500
Low-specificity phosphatase.
  
  
 0.817
GWL_33490
Sugar phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.816
GWL_33540
RNA polymerase sigma-N (sigma-54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.739
GWL_14620
Flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.726
GWL_33470
Glutathione-regulated potassium-efflux system K+/H+ antiporter transmembrane protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
     0.693
GWL_45560
Exoribonuclease R protein.
  
     0.692
GWL_08360
Transmembrane protein.
  
   
 0.684
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.