Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_34140Hypothetical protein. (328 aa)    
Predicted Functional Partners:
GWL_34130
Transmembrane protein.
 
 
 0.985
GWL_34350
Hypothetical protein.
 
 
 0.920
GWL_34360
Transmembrane protein.
 
  
 0.916
GWL_34270
Hypothetical protein.
 
 
 0.915
GWL_34150
Outer membrane (related peptidoglycan-associated) protein.
 
  
 0.912
GWL_34300
Hypothetical protein.
 
 
 0.909
GWL_34290
Hypothetical protein.
 
  
 0.892
GWL_34340
Transmembrane protein.
 
  
 0.892
GWL_34320
Hypothetical protein.
 
 
 0.891
GWL_34280
Hypothetical protein.
 
  
 0.886
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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