Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_34680Phage P2 baseplate assembly protein. (307 aa)    
Predicted Functional Partners:
GWL_34670
Phage P2 baseplate assembly W protein.
 
 
 0.998
GWL_34690
Bacteriophage P2-related tail formation protein.
 
 
 0.998
GWL_34740
Bacteriophage major tail sheath protein.
 
 
 0.996
GWL_34590
Phage-related tail protein.
 
 
 0.995
GWL_34750
Bacteriophage-related major tail tube FII protein.
 
 
 0.995
GWL_34790
Bacteriophage P2 phage-related tail U protein.
 
 
 0.995
GWL_34660
Phage P2 baseplate assembly gpV protein.
 
  
 0.994
GWL_34700
Bacteriophage variable tail fiber protein.
 
  
 0.990
GWL_34800
Bacteriophage-related tail D protein.
 
  
 0.984
GWL_34720
Phage-related hypothetical protein.
  
  
 0.976
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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