Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_35190Signal peptide protein. (211 aa)    
Predicted Functional Partners:
GWL_35210
Organic solvents resistance ABC transporter periplasmic protein.
 
 0.999
GWL_35180
Hypothetical protein.
  
 
 0.992
GWL_22370
Organic solvents resistance ABC transporter periplasmic protein.
  
 0.985
GWL_35230
Organic solvents resistance ABC transporter ATPase.
 
 
 0.974
GWL_35200
Surface lipoprotein (VacJ) transmembrane protein.
 
 
 
 0.970
GWL_35220
ABC transport system permease protein.
 
 
 0.969
GWL_22350
Organic solvents resistance ABC transporter permease.
  
 
 0.926
GWL_22360
Organic solvents resistance ABC transporter ATPase.
  
 
 0.922
GWL_28350
Paraquat-inducible B protein.
  
  
 0.825
GWL_16140
Transmembrane protein; Belongs to the skp family.
  
  
 0.701
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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