Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_35340Hypothetical protein. (162 aa)    
Predicted Functional Partners:
GWL_39340
NMN adenylyltransferase/nudix hydrolase.
     
  0.618
GWL_42470
Hypothetical protein.
     
  0.616
GWL_02700
Thioredoxin 1; Belongs to the thioredoxin family.
    
   0.580
GWL_19120
Hypothetical protein.
    
   0.580
nadE
Glutamine-dependent NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.570
nadE-2
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.570
tuf
GTPase translation elongation factor TU; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
   0.505
GWL_42900
GTPase translation elongation factor TU.
    
   0.505
GWL_03450
TonB-dependent siderophore receptor protein.
    
   0.500
GWL_17500
TonB-dependent siderophore receptor; Overlaps another CDS with the same product name.
    
   0.500
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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