Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_35690Lipoprotein. (196 aa)    
Predicted Functional Partners:
GWL_35710
Heme O oxygenase (cytochrome aa3-controlling) transmembrane protein.
 
 0.979
ctaB
Protoheme IX farnesyltransferase (heme O synthase) transmembrane protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
 0.969
GWL_35790
Cytochrome c oxidase polypeptide II precursor transmembrane protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 0.924
GWL_35730
Transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein.
 
 
 0.913
GWL_45510
Thioredoxin-related transmembrane protein.
 
 
 0.889
GWL_35770
Cytochrome C oxidase assembly transmembrane protein.
 
 0.848
GWL_18950
Cytochrome o ubiquinol oxidase subunit II protein.
  
 0.843
GWL_40350
Thioredoxin protein.
 
 
 0.822
GWL_35720
Transmembrane protein.
       0.767
GWL_35890
Hypothetical protein.
 
   
 0.748
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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